Table 3. Functional gene analysis by module in the prophage regions predicted by PHASTEST

Region	Integration	Packaging	Structural	Lysis	Regulatory	Metabolism	Adhesion	Bacteriocin/Defense	Accessory/Unknown
Region 1	Integrase (xerC), att	Terminase, portal	Capsid, tail, tape measure, holin	Holin	LexA/xre, cro/C1, arpU	Glycohydrolase	XkdX	SGNH/GDSL hydrolase	DUF3799, DUF2528
Region 2	Integrase (xerC_3), insK, transposase	-	-	-	Tyrosine phosphatase	RfbA, cpsC/D/G, epsF_2	-	-	Hypothetical proteins
Region 3	Integrase (xerC_6), att, tRNA hotspot	Terminase, portal, SNF2	Capsid, tail, tape measure, baseplate	Holin, endonuclease, peptidase	LexA/xre, XRE, arpU	Replication protein, glycohydrolase	Lipoprotein, TMhelix	DNA methyltransferase, ABC transporter	DUF3168, DUF1508, DUF669

PHASTEST, phage search tool with enhanced sequence translation; att, adenine-thymine-thymine; tRNA, Trp, Asn, Ile, Leu, Met, Gly; arpU, antirepressor; SGNH, serine, glycine, asparagine, histidine; GDSL, Gly-Asp-Ser-Leu.